Showing 14 results for Uti
A Halako, N Mozfari, H Forohesh, M Khormali,
Volume 1, Issue 1 (4-2007)
Abstract
Abstrac t
Background and Objectives:
pathogenic species of vibrio. It is a salt-requiring organism. It cases
watery diarrhea often with abdominal cramping, nausea, vomiting and
fever. This study was performed to assess the seawater samples of
Caspian coastal regions.
Vibrio parahaemolyticus is one of
Materials and methods:
APW and TCBS agar media and then biochemistry tests were used to
distinguish vibrio parahemolytic.
Methods used to isolate this organism were
Results:
parahaemolyticus(
Gaz and the rest from khomishan region.)
Of 73 seawater samples, we could isolate 32 Vibrio16 of them from Bandar Turkmen, 10 of Bandar
found abundantly in Caspian coastal regions.
Conclusion: This study indicated that Vibrio parahaemolyticus can be
parahaemolyticus, distribution,
Key words: Southeastern Caspian coastal regions, Vibrio
Babaii Kochaksaraii M, Nasrolahiomran A, Javid N, Shakeri F, Yazdi M, Ghaemi E A,
Volume 6, Issue 1 (4-2012)
Abstract
Abstract Background and objectives: The increase of ESBL producing E.coli can create a tremendous difficult y for the health system. These isolates leads to rapid transmission of causative genes to other clinically important bacteria and synchronously increased resistant to other antibiotics. This study was carried out to determine the prevalence of this isolate and related genes in Gorgan, North of Iran. Material and Methods: This study was conducted on 218 isolated E.coli from urinary tract infection of outpatients referring to six medical laboratories in Gorgan, during 2010-11. The resistance to Cefotaxim (Mast Co.) was assessed by Kirby-Bauer disk diffusion method. The confirmatory test for detection of resistant isolates was carried out by double disk method at the presence of Cefotaxim and clavulanic acid. The presence of β lactamase gene of blatem, blactx and blashv in ESBL was assessed by PCR method. Results: of 218, 70 isolates (32.1%) are resistant to Cefotaxim. Sixty-two (88.6%) of them are confirmed as ESBL producing E.coli. β lactamase genes of blactx, blatem and blashv can be seen in 28(45.2%), 26(41.9%) and 6(9.7%) isolates, respectively. Conclusion: the prevalence of ESBL producing E.coli in Gorgan is in the range of country average and blaCTX-M gene is the most common gene. Key words: E.coli, ESBL, bla gene, UTI
Jahani, S, Shahreki Zahedani, Sh, Karbasizade, V,
Volume 8, Issue 4 (1-2015)
Abstract
Abstract Background and Objective: In the past, most strains of E. coli were susceptible to a wide range of antimicrobial agents, but this situation is now changed by indiscriminate use of antibiotics. Ceftriaxone and Ceftazidime are the most current antibiotics used for Enterobacteriaceae infections in hospitals. The aim of this study was to determine antimicrobial resistance of Escherichia coli strains isolated from patients. Material and Methods: During a 12-month period, 200 clinical samples taken from patients referred to Zahedan hospitals were assessed to isolate Escherichia coli. Antibiotic susceptibility was determined by disk diffusion method and micro-broth dilution and Bla TEM resistance genes were detected by PCR. Results: Following phenotype verification testing, 112 isolates (56%) were produced Extended Spectrum Beta Lactamase (ESBLs) and 130 isolates were potential producers of beta-lactamase (ESBL). Using PCR, 72 isolates (38.55%) have TEM gene. Conclusion: The rate of antibiotic resistance of Escherichia coli isolates to ceftriaxone and ceftazidime is high therefore, it seems reasonable to do antibiogram before treatment. Keywords: Extended-Spectrum-Beta-Lactamase, Esherchia coli, Disc Diffusin, Micro-Broth Dilution
M Shojaee, Farzanegi, P, M Habibian,
Volume 9, Issue 1 (4-2015)
Abstract
Abstract
Background and Objective: Diabetes mellitus is associated with cardiomyopathic changes, can be mediated by an oxidative stress. We aimed to study the effects of regular aerobic training and arbutin supplementation on total oxidant status (TOS) and total antioxidant (TAS) status in the cardiac tissue of diabetic rats.
Material and Methods: fourty-two male Wistar rats with an average weight of 195 to 220 gr were randomly divided into 6 groups (7 rats per group) of control, diabetes, Arbutin, diabetes + Arbutin, diabetes + aerobic training and diabetes + aerobic training + Arbutin. Swimming training protocol consisted of 5 days/week for 6 weeks and each session was 5-36 min/day. Diabetes was induced with alloxan intraperitoneally and Arbutin (50 mg/kg) was administered subcutaneously.
Results: Induced- diabetes significantly increased TOS and decreased TAS in rat heart tissue (P = 0.000). Six weeks of supplementation with Arbutin, aerobic training and combination of aerobic training and Arbutin supplementation were associated with a significant decrease in TOS (88%, 91% ,103% Respectively ) and increase in TAS (33% ,62% ,67% Respectively ).
Conclusion: Compared to arbutin, aerobic training can be more effective in creating adaptation in the antioxidant defense system.
Keywords: Aerobic Training, Arbutin, Total Oxidant Status, Total Antioxidant Status, Diabetes.
Mohammad Arjmand , Ezatallah Ghaemi , Ailar Jamalli ,
Volume 11, Issue 1 (1-2017)
Abstract
ABSTRACT
Background and Objectives: Biofilm is a population of bacteria growing on a surface and enclosed in an exopolysaccharides matrix, which increases resistance to antimicrobial agents and immune response. Uropathogenic Escherichia coli (UPEC) are biofilm-forming bacteria and the most common cause of urinary tract infections (UTIs). This study evaluated the effect of different concentrations of glucose, NaCl, blood, serum and urine on biofilm formation and antigen 43 (Ag43) gene expression, as a main gene involved in biofilm formation.
Methods: Among E. coli isolates from patients with UTI, four extended-spectrum beta-lactamase (ESBL) and non-ESBL strains, and a standard UPEC strain were selected. Biofilm formation of the strains in brain heart infusion (BHI) broth with different concentrations of glucose, NaCl, sheep blood, serum and human urine was evaluated using microplate method and crystal violet staining. Ag43 gene expression was investigated using Real-Time polymerase chain reaction, SYBR Green dye, and specific primers.
Results: Presence of glucose at all concentrations reduced biofilm formation. Presence of 1% NaCl, 1% sheep blood, 10% bovine serum, and 5% urine significantly increased biofilm formation. Expression of Ag43 by the strains grown under 1% glucose, 1% NaCl, 1% sheep blood, 10% bovine serum and 5% urine decreased.
Conclusion: All environmental factors other than glucose may increase biofilm formation of E. coli at different concentrations. This is not affected by factors such as isolation from inpatient or outpatients and type of strains (ESBL or non-ESBL). Contrary to our expectations, Ag43 expression is independent of environmental factors and decreases even under the most suitable concentrations.
Keywords: Biofilms, Uropathogenic Escherichia coli, UTI, Antigen 43, Real-Time PCR.
Jaber Ali Poor , Mansor Dabirzadeh, Yahya Marofi , Seyed Ali Asghar Sefidgar,
Volume 11, Issue 3 (5-2017)
Abstract
ABSTRACT
Background and objective: Surgery is the gold standard treatment for hydatidosis. Scolicidal agents could be used during surgery to kill
protoscoleces and prevent cyst recurrence after rupturing of main lesion. Non-chemical agents with sufficient
protoscolex-killing activity are known to be fully effective in this regard with fewer side effects. Fig tree is an Iranian native plant, which has been used for medicinal purposes in traditional medicine.
Methods: After obtaining infected hydatid cyst of the liver from a slaughterhouse in Babol (Iran), the percentage of live
protoscoleces was calculated by critical staining with 0.1 % eosin. Then, the protoscolex-killing activity of methanolic extract of fig leaves was evaluated at concentrations of 2.5, 5, 10, 15 and 20 mg/ml in 2, 4, 8, 12, and 16 minutes exposure times
. Statistical analysis was performed using SPSS software (version 22).
Results: Concentration of 20 mg/ml of the extract showed 100% protoscolex-killing activity within the first 2 minutes of exposure. In addition, the lowest protoscolex-killing activity (45%) was observed at concentration of 2.5 mg/ml after 2 minutes. The results also showed that the protoscolex-killing activity of the extract increases significantly in a concentration- and time-dependent manner (P <0.001).
Conclusion: The methanolic extract of fig leaf at concentration of 20 mg/ml could exert significant scolicidal effect within 2 minutes of exposure. Therefore, complementary experiments should be performed on animal models to further assess the efficiency of the extract for killing protoscoleces of hydatid cyst during surgery.
Keywords: Echinococcus granulosus, methanolic extract of
Ficus carica, broth dilution.
Semira Kheiri, Mahdieh Safarzad, Mohammad Shariati, Hoda Sohrabi ,
Volume 12, Issue 5 (9-2018)
Abstract
ABSTRACT
Background and Objectives: Non-synonymous single nucleotide polymorphisms are typical genetic variations that may potentially affect the structure or function of expressed proteins, and therefore could be involved in complex disorders. A computational-based analysis has been done to evaluate the phenotypic effect of non-synonymous single nucleotide polymorphisms in the gene encoding the human hypoxanthine-guanine phosphoribosyltransferase (HGPRT-1). HGPRT-1 is an enzyme involved in purine recycling pathway and its deficiency is associated with several human genetic disorders.
Methods: We provide a list of all amino acid replacements in the human HGPRT-1 from the dbSNP, Uniprot and dbEST databases. Sorting intolerant from tolerant (SIFT) and PolyPhen softwares were also used in our study.
Results: Of 94 amino acid substitutions, rs 267606863 was predicted to be the most deleterious. Substitutions of S110L and S104A in flexible loop and D194N, D201Y, H204R, Y195C, F199V and H204D in hood domain were predicted as functionally damaging.
Conclusion: It could be concluded that these intolerant changes may lie within a functional region of the protein and may affect the stability and folding of HGPRT-1. These variants could be used for future functional and molecular epidemiology studies of HGPRT-1-related disorders.
Keywords: Polymorphism, Single Nucleotide, Amino acid substitution, Hypoxanthine Phosphoribosyltransferase.
Neda Gharagozloo Hesari, Davoud Esmaeili, Taher Mohammadian, Mohammad Hasan Shahhosseini, Atousa Ferdosi,
Volume 14, Issue 6 (11-2020)
Abstract
Background and objectives: Industrial wastewater is worldwide health concern. Microorganisms present in the environment have an important role in the biodegradation of lipids, fats and proteins from wastewater. In this regard, microbial lipases and proteases are interesting research targets because of high stability, broad substrate specificity, high yields and availability. In this study, we analyze sequences encoding lipase of Pseudomonas putida and subtilisin of Bacillus subtilis for generation of a new recombinant protein for degradation of environmental contaminations caused by lipids and proteins.
Methods: In this study, sequences of the genes encoding lipase and subtilisin were obtained from GenBank. To predict the 3D structure of the protein, modeling was carried out. The prediction of secondary structure, tertiary structure and solvent accessibility was carried using bioinformatics tools including I-TASSER, GoR4 and ExPasy.
Results: The lipase-subtilisin fusion protein was well-characterized by bioinformatical studies with appropriate spatial and secondary structures. The protein had appropriate hydrophilicity, biological half-life and thermal and acidic stability. The codon optimization was performed appropriately.
Conclusion: Overall, the bioinformatical analysis of the designed protein showed that the recombinant lipase-subtilisin protein has a stable structure both in vitro and in vivo, a negative normalized B-factor and lipolytic and proteolytic activities, which makes it suitable for treatment of lipid and protein contaminations.
Mohammad-Ali Mohaghegh, Roghayeh Norouzi, Abolghasem Siyadatpanah, Farzaneh Mirzaei, Ali Fatahi Bafghi, Seyed-Reza Mirbadie,
Volume 15, Issue 3 (5-2021)
Abstract
Background and objectives: Soil contamination with Toxocara spp. eggs is the main source of human toxocariasis. The aim of this study was to determine rate of soil contamination with Toxocara spp. eggs in Yazd, central Iran.
Methods: During September 2014 to February 2015, a total of 220 soil samples were collected from public parks, primary schools, green areas, kindergartens, suburban areas, streets, residential complexes, backyards and a bus terminal in the city of Yazd, Yazd Province. Soil samples were investigated for the presences of Toxocara eggs by flotation technique using sucrose solution (1.2 g/cm3) and using light microscopy. Data analysis was carried out by SPSS (version 23) software package.
Results: A total of 220 soil samples from nine different places were examined. Of these samples, 51 (23.2%) were contaminated with Toxocara spp. eggs. The contamination rate was 26.3% in public parks, 19.2% in primary schools, 28.6% in green areas, 22.2% in kindergartens, 24% in suburban areas, 8.3% in streets, 18.8% in residential complexes, 19% in backyards and 28.6% in the bus terminal. There was no significant difference in the soil contamination rate with Toxocara spp. eggs between different sampling places (χ2 = 3.096, d.f = 8 and P= 0.92) and sampling areas (χ2= 2.289, d.f = 2 and P= 0.318).
Conclusion: The high rate of soil contamination with Toxocara spp. eggs in Yazd emphasize on the need for preventive measures, such as improving sanitation, providing public health education and controlling stray dogs and cats near children play areas.
Yogita Mistry, Tanvi Panwala, Summaiya Mullan,
Volume 15, Issue 6 (11-2021)
Abstract
Background and objectives: Microscopic agglutination test is the gold standard sero-diagnostic method for detection of leptospirosis. Moreover, it helps identify serovars and their titers in serum samples. For obtaining accurate titer results, proper sampling, collection, storage, and transportation of samples are crucial while maintaining the cold chain. Since storage for long periods and the subsequent deterioration of samples may affect the final titers, we proposed an alternative method of MAT testing using filter paper-dried serum samples. We also evaluated sensitivity and specificity of the MAT test by using filtered-dried serum samples compared with the conventional MAT test.
Methods: This experimental study was performed on human and animal serum samples that were sent to a reference leprospirosis laboratory in 2020. Overall, 142 positive samples (with 289 titers for different strains) and 15 negative samples were used for MAT test using filtered-dried serum. For this purpose, each sample was dried on a filter paper (Whatman 903, GE Healthcare) at room temperature (20-30 °C) and kept for four days. On the fifth day, the filter papers were cut into small pieces, soaked in phosphate buffer saline, vortexed, and slowly mixed on shaker for two hours to elute antibodies. The MAT tests were performed simultaneously and under the same environmental conditions.
Results: The new MAT test using dried serum samples showed 79% sensitivity and 100% specificity. The test also had positive predictive value of 92% and negative predictive value of 24% when compared with the gold standard MAT test.
Conclusion: Filter-dried serum can be used for MAT test to overcome serum storage and transportation problems.
Temidayo Adeniyi, Akinpelu Moronkeji, Victor Ekundina,
Volume 17, Issue 5 (9-2023)
Abstract
Background: Human activities continually impact the environment negatively. Some activities are particularly linked to river pollution, and this constitutes a major problem in certain regions of Nigeria. This is a result of economic development, anthropogenic human activities, and agricultural practice that have the potential for adverse health effects. This study evaluated the effect of heavy metals acquired from the waterways on the vital organs of experimental rats.
Methods: Seventy (70) adult male Wistar rats, average weighing between 150-180g, were divided into seven groups of ten animals, each selected by simple randomization. Pooled sampled water and water containing the highest average concentration of singly and combined heavy metals noted in the waterways from three geological zones in Kwara state, Nigeria, were respectively given to the Wistar rats within the treatment groups ad libitum for 65 days. The kidney, liver, and testes were harvested and processed for paraffin embedding, and the effect of the heavy metals was histologically assessed.
Results: Histological staining revealed variable histopathological alterations in the kidney, liver, and testes of rats in the treatment groups in comparison to the control group.
Conclusion: Increased levels of heavy metals in waterways can adversely affect the organs when used for household purposes. Activities in these water bodies must be checked by regulatory agencies, and laws to discriminate against the dumping of waste in water bodies should be enforced.
Toukam Michel, Voundi-Voundi Esther, Bole Bernard, Mviena Nyimbe Louise, Sahmo Simon Stevensen, Nogue Raissa, Kasia Jean Marie,
Volume 18, Issue 3 (5-2024)
Abstract
Background: Syphilis has serious consequences for human health and poses challenges for biological diagnosis. Techniques such as chemiluminescence are still poorly known in our context. Our objective was to compare chemiluminescence and hemagglutination assays with immunoblot as a reference test for detecting anti-Treponema pallidum antibodies.
Methods: Anti-Treponema pallidum antibodies were detected in serum samples. Comparison of chemiluminescence and hemagglutination assays was carried out with immunoblot as the reference test, based on sensitivity, specificity, positive and negative predictive values, and kappa statistic, using IBM-SPSS version 24 software. The significance level was set at 5%.
Results: A total of 600 participants were recruited, with a prevalence of syphilis infection of 3%. Sensitivity and specificity were 100% and 96.2% for chemiluminescence, and 93.8% and 100% for hemagglutination, respectively. Cohen's kappa statistic between the two tests showed satisfactory agreement (0.768). Cohen's kappa agreements between chemiluminescence/immunoblot and plate hemagglutination assay/immunoblot were greater than 0.8, indicating excellent agreement with the reference test (p<0.0001).
Conclusion: Chemiluminescence is more sensitive but less specific than hemagglutination. The use of chemiluminescence as a first-line test for the diagnosis of syphilis should be considered.
Mahsa Shad, Ayeneh Hagieh Pangh, Farideh Tohidi,
Volume 18, Issue 3 (5-2024)
Abstract
Background: Soil contamination with parasites poses a significant and concerning risk for the transmission of parasitic infections to humans and animals. Considering the crucial role of soil as a potential source of parasite transmission, this study aimed to investigate the presence of helminth and protozoan parasites in the soil of public parks in Gorgan City.
Methods: In this study, a total of 80 soil samples were collected from 16 public parks in Gorgan City in 2022. The soil samples were collected from various areas within the parks, including flower-making, children's play areas, walking paths, sitting areas, and garbage dumps. To isolate the parasites from the soil samples, a saturated solution of sodium nitrate was utilized. The samples were carefully examined under a microscope, and all isolates were stained and subjected to further investigation using special acid-fast stain.
Results: Toxocara eggs were the most commonly detected parasite, present in 40% of the samples (n=32). Coccidia oocysts were found in 12.5% of the samples (n=10), which could potentially be Sarcocystis or Toxoplasma oocysts. Mites were also detected in 12.5% of the samples (n=10). Additionally, Cryptosporidium oocysts were identified using Ziehl-Neelsen's modified staining method, and they were found in 10% of the samples (n=8).
Conclusion: Health education plays a vital role in raising awareness about preventive measures. Collecting reservoirs of parasites (Such as dogs and cats) and planning for the proper disposal of human waste also play an important role in prevention of this disease.
Sukanya Sudhaharan, Naga Appala Raju Sundarapu, Umabala Pamidimukkala,
Volume 18, Issue 4 (7-2024)
Abstract
Background and Objectives
The reference method for antifungal susceptibility testing is broth microdilution according to CLSI guidelines. However, the fully automated system, Vitek 2C system may reduce the workload and observer bias associated with manual broth microdilution. The aim of this study was to compare the results of YS08 card with the results of the broth microdilution method(BMD)
Methods
A total of 50 clinical Candida isolates were included in the study. The susceptibility testing was done by Vitek2C using the YS08 card .Broth microdilution was done as per CLSI guidelinesM27M44S-Ed3.
.
Results
For C. albicans, the categorical agreement was 85.8%, 71.5%, 85.8%, and 100% for fluconazole, voriconazole, caspofungin, and micafungin, respectively. The minor errors of 14.2% for fluconazole and caspofungin , 28.5% for vorionazole ,were detected in C. albicans. In C. glabrata, the Categorical agreement(CA)was 100% for micafungin, voriconazole, but 63.7% for caspofungin. A minor error of 36.3% for caspofungin were detected. C. parapsilosis showed 100% CA for fluconazole, caspofungin, micafungin and 85.8% for voriconazole. There were 14.2% of minor errors for voriconazole. In C.tropicalis, 100 % CA was observed for fluconazole, micafungin, caspofungin and 88.9% for voriconazole. 11.1% (1/9) of minor errors was observed for voriconazole. In C.auris, there was 100% CA observed for caspofungin, micafungin, 77.8% for fluconazole,66.7% for amphotericinB. There was a major error of 22.2% for fluconazole and 33.3% for amphotericinB.
Conclusion
In conclusion, majority of Vitek 2C showed comparable results with the BMD. There were only minor errors in the tested Candida species.
